me_default_options

 nk: number of kinetic models to be embedded

 me_options.c_init               
 me_options.Tmax                 
 me_options.set_external         
 me_options.set_internal         
 me_options.reaction_fixed_signs 
 me_options.fixed_signs          
 me_options.id                   
 me_options.fba_constraints      
 me_options.verbose              
 me_options.position_file        
 me_options.cofactors            
 me_options.v_network            
 me_options.arrowsize            
 me_options.squaresize           
 me_options.text_offset          
 me_options.arrowvaluesmax
 me_options.legendFontsize
 me_options.enforce_stationarity

0001 function me_options_default = me_default_options(nk)
0002 
0003 % nk: number of kinetic models to be embedded
0004 %
0005 % me_options.c_init
0006 % me_options.Tmax
0007 % me_options.set_external
0008 % me_options.set_internal
0009 % me_options.reaction_fixed_signs
0010 % me_options.fixed_signs
0011 % me_options.id
0012 % me_options.fba_constraints
0013 % me_options.verbose
0014 % me_options.position_file
0015 % me_options.cofactors
0016 % me_options.v_network
0017 % me_options.arrowsize
0018 % me_options.squaresize
0019 % me_options.text_offset
0020 % me_options.arrowvaluesmax
0021 % me_options.legendFontsize
0022 % me_options.enforce_stationarity
0023 
0024 
0025 % --------------------------------------------------------------------------
0026 % default values for me_options
0027 
0028 me_options_default.c_init               = [];
0029 me_options_default.Tmax                 = 5; 
0030 me_options_default.set_external         = {};
0031 me_options_default.set_internal         = {};
0032 me_options_default.reaction_fixed_signs = {};
0033 me_options_default.fixed_signs          = [];
0034 me_options_default.id                   = [];
0035 me_options_default.fba_constraints      = [];
0036 me_options_default.verbose              = 0;
0037 me_options_default.position_file        = [];
0038 me_options_default.cofactors            = {};
0039 me_options_default.v_network            = [];
0040 me_options_default.arrowsize            = 0.02;
0041 me_options_default.squaresize           = 0.02;
0042 me_options_default.text_offset          = [0.01,0.005];
0043 me_options_default.arrowvaluesmax       = []; 
0044 % maximal flux (shown in graphics)
0045 me_options_default.legendFontsize       = 4;
0046 me_options_default.enforce_stationarity = 0;
0047 
0048 id_default.metabolites_network        = 'metabolites';
0049 id_default.reactions_network          = 'actions';
0050 id_default.metabolites_kinetic_models = repmat({'metabolites'},nk,1);
0051 id_default.reactions_kinetic_models   = repmat({'actions'},nk,1);
0052 
0053 me_options_default.id = id_default;