ELASTICITY_SAMPLING - Matlab toolbox for thermodynamically feasible elasticity sampling
Main functions
es_default_options - Create option structures 'es_options' and 'es_constraints' with default parameters
es_sample_model - Sample all model parameters for a network;
wrapper around 'es_sample_steady_state' and 'es_sample_elasticities'
es_sample_multiple - Create model ensemble and collect values for an output function
es_compare_ensembles - Compare the output function for two model ensembles
Functions for individal phases of model sampling (called by 'es_sample_model')
es_sample_steady_state - Sample feasible stationary states for a network
es_sample_elasticities - Given a stationary state, sample elasticities, run MCA, and reconstruct model
Options for all functions are stored in matlab structs 'es_options' and 'es_constraints'.
Demos
See directory 'demo'
MATLAB toolboxes required
Metabolic Network Toolbox (https://github.com/liebermeister/metabolic-network-toolbox)
SBMLtoolbox - SBML import / export (http://sbml.org/Software/SBMLToolbox)
SBtab toolbox - SBtab format (https://github.com/liebermeister/sbtab-matlab)
Tensor toolbox - (http://www.sandia.gov/~tgkolda/TensorToolbox/index-2.5.html)
efmtool - Elementary flux modes (http://www.csb.ethz.ch/tools/efmtool)
Copyright (C) 2011-2013
Wolfram Liebermeister <wolfram.liebermeister@gmail.com>