Home > enzyme-cost-minimization > ecm_functions > ecm_one_run.m

ecm_one_run

PURPOSE

ECM_ONE_RUN - Perform one ECM run

SYNOPSIS

function [my_c, my_u, my_up, my_u_cost, my_A_forward, my_x, my_grad, my_lambda] = ecm_one_run(ecm_score,pp,x_min,x_max,x_init,ecm_options,opt)

DESCRIPTION

 ECM_ONE_RUN - Perform one ECM run
 
 function [my_c, my_u, my_up, my_u_cost, my_A_forward, my_x, my_grad, my_lambda] = ecm_one_run(ecm_score,pp,x_min,x_max,x_init,ecm_options,opt)

CROSS-REFERENCE INFORMATION

This function calls:

ecm_get_score ECM_GET_SCORE - Helper function
ecm_inequalities MEASURES_FOR_ENZYME_COSTS_INEQUALITIES - Helper function
ecm_regularisation ECM_REGULARISATION - Regularisation term for ECM

This function is called by:

ecm_enzyme_cost_minimization ECM_ENZYME_COST_MINIMIZATION - Compute optimal flux-specific enzyme costs for given flux distribution