Index for ./enzyme-cost-minimization/ecm_functions

Matlab files in this directory:

Contents	Internal functions for Enzyme Cost Minimisation
ecm_BASEDIR	ECM_BASEDIR - Return ECM toolbox directory
ecm_below_threshold	ECM_BELOW_THRESHOLD - Helper function for enzyme cost minimization
ecm_check_parameter_balancing	ECM_CHECK_PARAMETER_BALANCING - Checks for balanced parameters
ecm_default_options	ECM_DEFAULT_OPTIONS - Defaults for ECM
ecm_dependencies	ECM_DEPENDENCIES - Check whether dependencies of ECM toolbox are satisfied
ecm_display	ECM_DISPLAY - Display results of ECM
ecm_get_one_u	ECM_GET_ONE_U - Helper function for enzyme variability calculation after enzyme cost minimization:
ecm_get_score	ECM_GET_SCORE - Helper function
ecm_get_specific_rates	ECM_GET_SPECIFIC_RATES - Helper function
ecm_inequalities	MEASURES_FOR_ENZYME_COSTS_INEQUALITIES - Helper function
ecm_kegg_compound_id_to_name	ECM_KEGG_COMPOUND_ID_TO_NAME - Name conversion for compounds
ecm_load_model_and_data_sbtab	ECM_LOAD_MODEL_AND_DATA_SBTAB - Load data from SBtab file
ecm_one_run	ECM_ONE_RUN - Perform one ECM run
ecm_read_options	ECM_READ_OPTIONS - Read ECM options from file
ecm_regularisation	ECM_REGULARISATION - Regularisation term for ECM
ecm_save_model_and_data_gams	ECM_SAVE_MODEL_AND_DATA_GAMS - Save input files for ECM by GAMS solvers
ecm_save_model_and_data_sbtab	ECM_SAVE_MODEL_AND_DATA_SBTAB - Write SBtab file containing (model and data) information for Enzyme Cost Minimization
ecm_save_result_sbtab	ECM_SAVE_RESULT_SBTAB - Save ECM results in SBtab format
ecm_setup	ECM_SETUP - Determine data directory
ecm_tolerances	ECM_TOLERANCES - Compute approximate tolerance ranges for metabolites and enzymes
ecm_update_options	ECM_UPDATE_OPTIONS - Helper function for ECM options (struct 'ecm_options')