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ecm_parameter_balancing

PURPOSE ^

ECM_PARAMETER_BALANCING - Prepare and run parameter balancing

SYNOPSIS ^

function [r, r_orig, kinetic_data, r_samples, ecm_options] = ecm_parameter_balancing(network, ecm_options, kinetic_data);

DESCRIPTION ^

 ECM_PARAMETER_BALANCING - Prepare and run parameter balancing

 [r, r_orig, kinetic_data, ecm_options] = ecm_parameter_balancing(network, ecm_options, kinetic_data);

 Output
   r        Kinetic constants (used as input in parameter balancing)
   r_orig   Original kinetic constants (used as input in parameter balancing)
 
 Uses (potentially) the following options from ecm_options.
  ecm_options.flag_given_kinetics
  ecm_options.reaction_column_name (only if no kinetic data are given)
  ecm_options.compound_column_name (only if no kinetic data are given)
  ecm_options.kcat_usage  {'use','none','forward'} (default: 'use')
  ecm_options.kcat_prior_median
  ecm_options.kcat_prior_log10_std
  ecm_options.kcat_lower
  ecm_options.kcatr_lower
  ecm_options.kcat_upper
  ecm_options.KM_lower
  ecm_options.Keq_upper
  ecm_options.quantity_info_file
  ecm_options.GFE_fixed
  ecm_options.use_pseudo_values

CROSS-REFERENCE INFORMATION ^

This function calls: This function is called by:
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