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Wolfram Liebermeister
wolfram.liebermeister@gmail.com
INRAE -
Unité MaIAGE
Domaine de Vilvert 78352 Jouy-en-Josas, France
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DFG-funded research project
"Dynamics and function of enzyme regulation in large metabolic networks"
Models and data
Metabolic network models
| Bacillus subtilis |
(central metabolism model built from KEGG reaction IDs) |
[SBML] |
[SBtab] |
| Escherichia coli |
(central metabolism model built from KEGG reaction IDs) |
[SBML] |
[SBtab] |
| Human hepatocyte |
(adapted from original model provided by A. Hoppe) |
[SBtab] |
| Lactococcus lactis |
(adapted from original model provided by D. Bellomo) |
[SBtab] |
| Saccharomyces cerevisiae |
(central metabolism model built from KEGG reaction IDs) |
[SBML] |
[SBtab] |
The format SBtab for data and models was developed within the project.
Data used for model building
| Thermodynamic data |
| Standard Gibbs free energies (provided by E. Noor)
[SBtab] |
| Metabolite concentrations |
| Bacillus subtilis | (Buescher et al., 2012) |
[SBtab] |
| Escherichia coli | (Bennet et al. 2009 and other sources) |
[SBtab] |
| Escherichia coli | (Tepper et al., 2013) |
[SBtab] |
| Saccharomyces cerevisiae | (Albe et al., 1990) |
[SBtab] |
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| Protein abundances |
| Bacillus subtilis | (Maass et al.) |
[SBtab] |
| Escherichia coli | (Arike et al., 2012) |
[SBtab] |
| Escherichia coli | (Lu et al., 2007) |
[SBtab] |
| Escherichia coli | (Valgepea et al., 2013) |
[SBtab] |
| Saccharomyces cerevisiae | (Nagaraj et al., 2012) |
[SBtab] |
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| Metabolic fluxes |
| Bacillus subtilis | (Kleijn et al., 2011) |
[SBtab] |
| Escherichia coli | (Chen et al., 2010) |
[SBtab] |
| Saccharomyces cerevisiae | (Christen et al., 2011) |
[SBtab] |
Models and data accompanying the model construction methods developed in this project