 cba_constraints_reduce_to_active | CBA_CONSTRAINTS_REDUCE_TO_ACTIVE - Remove inactive reactions in cba_constraints |
| cba_dependencies | |
| cba_economic_quantities | CBA_METABOLITE_AND_ENZYME_PRICES - Convenience function for computing economic quantities |
| cba_efm_remove_duplicates | EFM_REMOVE_DUPLICATES - Remove duplicate columns in Elementary Flux Mode Matrix |
| cba_efm_remove_nonelementary | M = efm_remove_nonelementary(M,E) |
| cba_fitness_function | [f,s,v,fplus,fminus,zx, s, v] = cba_fitness_function(u,c_init,network,constraints) |
| cba_flux2model_constraint | [g, geq] = cba_flux2model_constraint(E_vector,N,ind_ext,zv,epsilon) |
| cba_flux2model_mrl_constraint | [g, geq, Ec_un, beta_M, beta_A, beta_I, CJ] = cba_flux2model_mrl_constraint(beta_M_vector,Mplus,Mminus,Wplus,Wminus,E_sc_T,v,c,N,ind_ext,cba_constraints,kinetic_law) |
| cba_flux2model_mrl_constraint_xi | function [g, geq, Ec_un, beta_M, beta_A, beta_I, c, mu, CJ] = cba_flux2model_mrl_constraint_xi(xi,Mplus,Mminus,Wplus,Wminus,v,N,ind_ext,cba_constraints,kinetic_law) |
| cba_opt_constraints | |
| cba_reduce_to_active_subnetwork | [v,N_int,Es,network_act,constraints,ind_active,ind_met_active] = cba_reduce_to_active_subnetwork(v,N_int,Es,network,constraints) |
| cba_set_external_prizes | z_ext = cba_set_external_prizes(network,list); |
| cba_update_constraints | cba_constraints = cba_update_constraints(cba_constraints,Next) |
| cbaf1 | constraints for EBA and CBA |
| cbaf2 | constraints for EBA and CBA |
| cbaf2w | constraints for EBA and CBA |
| cbaf3 | constraints for EBA and CBA |
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