Economics of periodic enzyme activities


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Linear chain

The model describes a chain of enzymatic reactions with mass-action kinetics. All forward and reverse rate constants are set to 1. The benefit function scores the average flux (i.e., the rate of product production). Predefined oscillations in the initial substrate X1 promote a wave of enzyme activity along the chain. (Legend: squares represent enzymes, circles represent metabolites)

Substrate oscillation without enzyme adaptation
Substrate oscillation with enzyme adaptation

Results (.pdf)