 Contents | ====================== |
| cmb_basedir | |
| cmb_default_options | cmb_options = cmb_default_options() |
| cmb_display_scores | |
| cmb_estimation | [optimal, gradient_V, init, time] = cmb_estimation(network, q_info, bounds, data, prior, preposterior, pp, V, cmb_options) |
| cmb_filenames | filenames = cmb_filenames(model_name, result_dir, network_sbml_file) |
| cmb_generate_artificial_data | [kinetics, prior, bounds, data, true, kinetic_data, state_data] = cmb_generate_artificial_data(network, cmb_options, q_info) |
| cmb_graphics | |
| cmb_log_posterior | |
| cmb_make_bounds | |
| cmb_make_pp | Structure pp contains the network and other information (needed to call ecm enzyme cost score function) |
| cmb_make_prior | the following distribution can be improved (using the results of kinetic parameter balancing) |
| cmb_model_and_data | [bounds, prior, init] = cmb_model_and_data(model, network, data, q_info, c_init, cmb_options) |
| cmb_model_artificial_data | [network, bounds, prior, q_info, data, true, kinetic_data, state_data] = cmb_model_artificial_data(network_file, cmb_options, c_init, position_sbtab_file, constraint_sbtab_file) |
| cmb_objective | % CURRENTLY NOT USED |
| cmb_prepare_posterior | -------------------------------------------------------- |
| cmb_prior_file | |
| cmb_resourcedir | |
| cmb_statistics | |
Master index