Structural thermokinetic modelling for metabolic models
Main | Models | Matlab code | Article
Simple pathway models
| Branched chain (es_model_branch_c1) | Flux movie | Results [pdf] | Model [SBtab] | [SBML] | |
| Branched chain (es_model_branch_c2) | Flux movie | Results [pdf] | Model [SBtab] | [SBML] | |
| Linear chain (es_model_linear_chain_c1) | Flux movie | Results [pdf] | Model [SBtab] | [SBML] | |
| Loop chain (es_model_loop_chain_c1) | Flux movie | Results [pdf] | Model [SBtab] | [SBML] |
Metabolic network models
| Bacillus subtilis central metabolism (bscm) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Bacillus subtils (bsu_ccm) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Escherichia coli threonine pathway | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Escherichia coli (ecoli_entner_doudoroff) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Escherichia coli (ecoli_glycolysis) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Escherichia coli CCM (eccm_ishii_growth_04) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Escherichia coli (ecoli_iAF1260) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | |
| Escherichia coli (ecoli_iJO1366) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | |
| Human erythrocyte | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Hepatonet ATP (hepatonet1_atp_o2_cs) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Hepatonet ATP (hepatonet1_atp_o2_ms) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Lactococcus lactis glycolysis | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Saccharomyces cerevisiae CCM (ycm) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Saccharomyces cerevisiae (yeast_jol) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] | [SBML] |
| Saccharomyces cerevisiae (yeast_stanford) | Flux movie | Results [pdf] | Data [SBtab] | Model [SBtab] |
